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http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#GuiL05 2005-09-12 Semi-supervised protein classification using cluster kernels. 3241-3247 2005 21 Bioinformatics 15 http://dx.doi.org/10.1093/bioinformatics/bti497 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WestonLIZEN05 2005-09-12 Functional annotation from predicted protein interaction networks. 3217-3226 2005 21 Bioinformatics 15 http://dx.doi.org/10.1093/bioinformatics/bti514 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#McDermottBS05 2005-09-12 Proteomic mass spectra classification using decision tree based ensemble methods. 3138-3145 2005 21 Bioinformatics 14 http://dx.doi.org/10.1093/bioinformatics/bti494 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#GeurtsFSMMMW05 2005-09-12 PROFcon: novel prediction of long-range contacts. 2960-2968 2005 21 Bioinformatics 13 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http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WrobelCP05 2005-11-07 A heuristic approach for detecting RNA H-type pseudoknots. 3501-3508 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti568 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#HuangLC05 2005-11-07 SynBrowse: a synteny browser for comparative sequence analysis. 3461-3468 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti555 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#PanSB05 2005-11-07 easyLINKAGE-Plus--automated linkage analyses using large-scale SNP data. 3565-3567 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti571 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#HoffmannL05 2005-11-07 Analysis of dose-response effects on gene expression data with comparison of two microarray platforms. 3524-3529 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti592 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#HuKZHC05 2005-11-07 TICO: a tool for improving predictions of prokaryotic translation initiation sites. 3568-3569 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti563 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#TechPMM05 2006-05-23 Automated Microarray Image Analysis Toolbox for MATLAB. 3578-3579 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti576 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WhiteDWPC05 2005-11-07 A precise and scalable method for querying genes in chromosomal banding regions based on cytogenetic annotations. 3469-3474 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti566 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#YenLLH05 2005-11-07 A parsimonious tree-grow method for haplotype inference. 3475-3481 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti572 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#LiZZC05 2005-11-07 A statistical model for HIV-1 sequence classification using the subtype analyser (STAR). 3535-3540 2005 21 Bioinformatics 17 http://dx.doi.org/10.1093/bioinformatics/bti569 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#MyersGHTK05 2006-07-28 ProRule: a new database containing functional and structural information on PROSITE profiles. 4060-4066 2005 21 Bioinformatics 21 http://dx.doi.org/10.1093/bioinformatics/bti614 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#SigristCLSBH05 2006-07-28 Shifting and scaling patterns from gene expression data. 3840-3845 2005 21 Bioinformatics 20 http://dx.doi.org/10.1093/bioinformatics/bti641 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#Aguilar-Ruiz05 2006-07-28 BADASP: predicting functional specificity in protein families using ancestral sequences. 4190-4191 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti678 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#EdwardsS05 2006-07-28 NdPASA: a pairwise sequence alignment server for distantly related proteins. 3803-3805 2005 21 Bioinformatics 19 http://dx.doi.org/10.1093/bioinformatics/bti619 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#LiWF05 2006-07-28 A novel strategy to design highly specific PCR primers based on the stability and uniqueness of 3'-end subsequences. 4363-4370 2005 21 Bioinformatics 24 http://dx.doi.org/10.1093/bioinformatics/bti716 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#MiuraUSI05 2006-07-28 CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences. 4304-4306 2005 21 Bioinformatics 23 http://dx.doi.org/10.1093/bioinformatics/bti691 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#HindemittM05 2006-07-28 MESHI: a new library of Java classes for molecular modeling. 3931-3932 2005 21 Bioinformatics 20 http://dx.doi.org/10.1093/bioinformatics/bti630 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#KalismanLMRZGK05 2006-07-28 Oligonucleotide arrays: information from replication and spatial structure. 4162-4168 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti668 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#UptonL05 2006-07-28 Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. 4205-4208 2005 21 Bioinformatics 23 http://dx.doi.org/10.1093/bioinformatics/bti688 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WachiYW05 2006-07-28 Assessing the application of Ka/Ks ratio test to alternatively spliced exons. 3701-3703 2005 21 Bioinformatics 19 http://dx.doi.org/10.1093/bioinformatics/bti613 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#XingL05 2006-07-28 Sample size determination for the false discovery rate. 4263-4271 2005 21 Bioinformatics 23 http://dx.doi.org/10.1093/bioinformatics/bti699 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#PoundsC05 2006-07-28 Classification of microarrays to nearest centroids. 4148-4154 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti681 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#Dabney05 2006-07-28 Study of coordinative gene expression at the biological process level. 3651-3657 2005 21 Bioinformatics 18 http://dx.doi.org/10.1093/bioinformatics/bti599 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#YuSYL05 2006-07-28 Pcons5: combining consensus, structural evaluation and fold recognition scores. 4248-4254 2005 21 Bioinformatics 23 http://dx.doi.org/10.1093/bioinformatics/bti702 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WallnerE05 2006-07-28 Using information theory to search for co-evolving residues in proteins. 4116-4124 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti671 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#MartinGDW05 2006-07-28 Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences. 4125-4132 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti658 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WuHL05 2006-07-28 Analysis of differentially-regulated genes within a regulatory network by GPS genome navigation. 4073-4083 2005 21 Bioinformatics 22 http://dx.doi.org/10.1093/bioinformatics/bti672 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#ZwirHG05 2006-07-28 Simple decision rules for classifying human cancers from gene expression profiles. 3896-3904 2005 21 Bioinformatics 20 http://dx.doi.org/10.1093/bioinformatics/bti631 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#TanNXWG05 2006-07-28 Haplotype-based linkage disequilibrium mapping via direct data mining. 4384-4393 2005 21 Bioinformatics 24 http://dx.doi.org/10.1093/bioinformatics/bti732 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#LiJ05 2006-07-28 Inference of transcriptional regulatory network by two-stage constrained space factor analysis. 4033-4038 2005 21 Bioinformatics 21 http://dx.doi.org/10.1093/bioinformatics/bti656 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#YuL05 2006-07-28 WebACT - an online companion for the Artemis Comparison Tool. 3665-3666 2005 21 Bioinformatics 18 http://dx.doi.org/10.1093/bioinformatics/bti601 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#AbbottARBS05 2006-07-28 Non-linear PCA: a missing data approach. 3887-3895 2005 21 Bioinformatics 20 http://dx.doi.org/10.1093/bioinformatics/bti634 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#ScholzKGKS05 2006-07-28 Oligonucleotide properties determination and primer designing: a critical examination of predictions. 3918-3925 2005 21 Bioinformatics 20 http://dx.doi.org/10.1093/bioinformatics/bti633 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#ChavaliMTMB05 2006-07-28 MicroRNA identification based on sequence and structure alignment. 3610-3614 2005 21 Bioinformatics 18 http://dx.doi.org/10.1093/bioinformatics/bti562 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#WangZLGHZL05 2006-07-28 mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. 4423-4424 2005 21 Bioinformatics 24 http://dx.doi.org/10.1093/bioinformatics/bti744 http://www.informatik.uni-trier.de/~ley/db/journals/bioinformatics/bioinformatics21.html#PlanetS05 2006-07-28 A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data. 4280-4288 2005 21 Bioinformatics 23 http://dx.doi.org/10.1093/bioinformatics/bti685 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